Using the CoSMoS Process to Enhance an Executable Model of Auxin Transport Canalisation

Philip Garnett; Susan Stepney; Francesca Day; Ottoline Leyser

Using the CoSMoS Process to Enhance an Executable Model of Auxin Transport Canalisation

Philip Garnett, Susan Stepney, Francesca Day, Ottoline Leyser

Research output: Contribution to conference › Paper

Abstract

We describe our use of the CoSMoS process to structure an incremental change of a biological simulation. The domain is auxin transport canalisation. An existing simulator is refactored to handle aspects of 2D and 3D space more efficiently, and enhanced to include more realistically-shaped plant cells. The CoSMoS process supports clear separation of concerns, allowing us to concentrate on the biological model and the implementation decisions separately. This gives a clear and well-justi fied simulator design that can be validated by biologists, yet still allows efficient implementation.

Original language	Undefined/Unknown
Pages	9-32
Publication status	Published - 2010

Access to Document

http://www-users.cs.york.ac.uk/~susan/bib/ss/nonstd/cosmos10.htm

Cite this

@conference{561ee12f475a43f881a6c10c7b09bce6,

title = "Using the CoSMoS Process to Enhance an Executable Model of Auxin Transport Canalisation",

abstract = "We describe our use of the CoSMoS process to structure an incremental change of a biological simulation. The domain is auxin transport canalisation. An existing simulator is refactored to handle aspects of 2D and 3D space more efficiently, and enhanced to include more realistically-shaped plant cells. The CoSMoS process supports clear separation of concerns, allowing us to concentrate on the biological model and the implementation decisions separately. This gives a clear and well-justi fied simulator design that can be validated by biologists, yet still allows efficient implementation.",

author = "Philip Garnett and Susan Stepney and Francesca Day and Ottoline Leyser",

year = "2010",

language = "Undefined/Unknown",

pages = "9--32",

}

TY - CONF

T1 - Using the CoSMoS Process to Enhance an Executable Model of Auxin Transport Canalisation

AU - Garnett, Philip

AU - Stepney, Susan

AU - Day, Francesca

AU - Leyser, Ottoline

PY - 2010

Y1 - 2010

N2 - We describe our use of the CoSMoS process to structure an incremental change of a biological simulation. The domain is auxin transport canalisation. An existing simulator is refactored to handle aspects of 2D and 3D space more efficiently, and enhanced to include more realistically-shaped plant cells. The CoSMoS process supports clear separation of concerns, allowing us to concentrate on the biological model and the implementation decisions separately. This gives a clear and well-justi fied simulator design that can be validated by biologists, yet still allows efficient implementation.

AB - We describe our use of the CoSMoS process to structure an incremental change of a biological simulation. The domain is auxin transport canalisation. An existing simulator is refactored to handle aspects of 2D and 3D space more efficiently, and enhanced to include more realistically-shaped plant cells. The CoSMoS process supports clear separation of concerns, allowing us to concentrate on the biological model and the implementation decisions separately. This gives a clear and well-justi fied simulator design that can be validated by biologists, yet still allows efficient implementation.

M3 - Paper

SP - 9

EP - 32

ER -